Arithmetic core generation using bit heaps

International audienceA bit heap is a data structure that holds the unevaluated sum of an arbitrary number of bits, each weighted by some power of two. Most advanced arithmetic cores can be viewed as involving one or several bit heaps. We claim here that this point of view leads to better global optimization at the algebraic level, at the circuit level, and in terms of software engineering. To demonstrate it, a generic software framework is introduced for the definition and optimization of bit heaps. This framework, targeting DSP-enabled FPGAs, is developed within the open-source FloPoCo arithmetic core generator. Its versatility is demonstrated on several examples: multipliers, complex multipliers, polynomials, and discrete cosine transform

Probing pattern and dynamics of disulfide bridges using synthesis and NMR of an ion channel blocker peptide toxin with multiple diselenide bonds

Anuroctoxin (AnTx), a 35-amino-acid scorpion toxin containing four disulfide bridges, is a high affinity blocker of the voltage-gated potassium channel Kv1.3, but also blocks Kv1.2. To improve potential therapeutic use of the toxin, we have designed a double substituted analog, N17A/F32T-AnTx{,} which showed comparable Kv1.3 affinity to the wild-type peptide{,} but also a 2500-fold increase in the selectivity for Kv1.3 over Kv1.2. In the present study we have achieved the chemical synthesis of a Sec-analog in which all cysteine (Cys) residues have been replaced by selenocysteine (Sec) forming four diselenide bonds. To the best of our knowledge this is the first time to replace{,} by chemical synthesis{,} all disulfide bonds with isosteric diselenides in a peptide/protein. Gratifyingly{,} the key pharmacological properties of the Sec-N17A/F32T-AnTx are retained since the peptide is functionally active. We also propose here a combined experimental and theoretical approach including NOE- and 77Se-based NMR supplemented by MD simulations for conformational and dynamic characterization of the Sec-N17A/F32T-AnTx. Using this combined approach allowed us to attain unequivocal assignment of all four diselenide bonds and supplemental MD simulations allowed characterization of the conformational dynamics around each disulfide/diselenide bridge